Hi,
on the FAQ you write under 'Can I run Jalview from the command line?'
···
##############
java -Djava.ext.dirs=$INSTALL_DIR$/lib -cp $INSTALL_DIR$/jalview.jar jalview.bin.Jalview -open [FILE]
(where $INSTALL_DIR$ is the InstallAnywhere installation directory or the dist directory created when building Jalview from source)
##############
but when compiling from source you have to omit '/lib' in the java-ext.dirs path (when using http://www.jalview.org/source/jalview_2_10_2b2.tar.gz)
Best,
Martin
--
Dr. Martin Raden, nee Mann, Postdoc
Bioinformatics - Prof. Dr. R. Backofen
Department of Computer Science
Albert-Ludwigs-University Freiburg
Add: Georges-Koehler-Allee 106, room 02012, 79110 Freiburg, Germany
Tel: ++49-761-203-8254 (Monday-Wednesday)
Fax: ++49-761-203-7462
http://www.bioinf.uni-freiburg.de/~mmann/
Forest Growth and Dendroecology
Institute of Forest Sciences
Albert-Ludwigs-University Freiburg
Add: Tennenbacher Str. 4, room 02062, 79106 Freiburg, Germany
Tel: ++49-761-203-3733 (Thursday+Friday)
Fax: ++49-761-203-3740
http://www.iww.uni-freiburg.de