AlignFrame.showSeqFeaturesHeight_actionPerformed() doesn’t seem to be used - delete?
The University of Dundee is a registered Scottish Charity, No: SC015096
Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
School of Life Sciences
University of Dundee, Dundee, Scotland, UK.
www.jalview.org
www.compbio.dundee.ac.uk
Hi Mungo
AlignFrame.showSeqFeaturesHeight_actionPerformed() doesn't seem to be
used - delete?
showSeqFeaturesHeight was an experiment where the feature score was
encoded as the height of the coloured block overlaid on a sequence to
represent the feature. After playing with it for a bit with proteomic
data, I realised the visual encoding model doesn't work well - it's hard
to distinguish height differences for vertically aligned features.
It's OK to remove the alignFrame action method, but I'm tempted to leave
the height-scale functionality in the FeatureRenderer. At least for the
next wave of refactoring.
Jim
On 23/08/2016 09:36, Mungo Carstairs (Staff) wrote:
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Dr JB Procter, Jalview Coordinator, The Barton Group
Division of Computational Biology, School of Life Sciences
University of Dundee, Dundee DD1 5EH, UK.
+44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk