Some new test failures seem to have crept in:
AAStructureBindingModelTest
- setUp calls StructureSelectionManager.setMapping(data, DataSourceType.PASTE) but PASTE is getting converted to FILE
JmolParserTest ‘expected localstruct but was localstruct.pdb’
JmolViewerTest NPEs in Jmol thread, not sure why
SeqPanelTest (failing test added for JAL-2563)
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···
Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
School of Life Sciences
University of Dundee, Dundee, Scotland, UK
www.jalview.org
www.compbio.dundee.ac.uk
g.m.carstairs@dundee.ac.uk
We’re Scottish University of the Year again!
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New failing Network tests are:
jalview.ext.jmol.JmolViewerTest.testStructureLoadingViaURL
jalview.io.FileLoaderTest.testDownloadStructuresIfInputFromURL
Unknown state failing tests:
jalview.ws.sifts.SiftsClientTest.getSIFTsFileTest,getSiftsStructureMappingTest
Expected fails
jalview.ext.paradise.TestAnnotate3D.test1GIDbyId,testIdVsContent2GIS,
testPDBfileVsRNAML
jalview.ws.PDBSequenceFetcherTest.testRnaSeqRetrieve
jalview.ws.jabaws.RNAStructExportImport.testRNAStructExport
···
On 30/05/2017 10:24, Mungo Carstairs (Staff) wrote:
Some new test failures seem to have crept in:
AAStructureBindingModelTest
- setUp calls StructureSelectionManager.setMapping(data,
DataSourceType.PASTE) but PASTE is getting converted to FILE
JmolParserTest 'expected localstruct but was localstruct.pdb'
JmolViewerTest NPEs in Jmol thread, not sure why
SeqPanelTest (failing test added for JAL-2563)
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Dr JB Procter, Jalview Coordinator, The Barton Group
Division of Computational Biology, School of Life Sciences
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Network test status update:
New failing Network tests are:
jalview.ext.jmol.JmolViewerTest.testStructureLoadingViaURL
jalview.io.FileLoaderTest.testDownloadStructuresIfInputFromURL
Thanks for fixing these, Charles.
Unknown state failing tests:
jalview.ws.sifts.SiftsClientTest.getSIFTsFileTest,getSiftsStructureMappingTest
This still fails - looks like the 'use SIFTS' beforeTest config is not
taking, at least on my machine:
jalview.ws.sifts.SiftsClientTest.getSiftsStructureMappingTest(SiftsClientTest.java:397)
which is:
Assert.assertTrue(SiftsSettings.isMapWithSifts());
HTH
Jim.
PS. testJvProps doesn't seem to set SIFTS at all.
···
On 30/05/2017 12:31, James Procter wrote: