to use jalview for standalone application

Jalview Discussion
1

Hello everyone,

i am trying to develop a standalone application on netbeans, and need to add an alignment viewer. So is it possible to add jalview jar and use it to display the multiple sequence alignment?
Would be great if someone could guide me in such direction.
Thanks.

Regards,
Nicee.

2

this is entirely possible, but you may need to tweak Jalview's GUI classes to work with your application.

Please sign up at http://www.jalview.org/mailman/listinfo/jalview-dev and we'll move the discussion over there.

···

On Mon Jul 9 19:50:22 2012, Nicee Srivastava wrote:

Hello everyone,

i am trying to develop a standalone application on netbeans, and need
to add an alignment viewer. So is it possible to add jalview jar and
use it to display the multiple sequence alignment?

3

Hey Jim,

Thanks a lot for your reply. I managed to add the Jalview alignment viewer in my application.
Thanks.

regards,
Nicee.

···

On Mon, Jul 9, 2012 at 11:46 PM, Jim Procter <jprocter@compbio.dundee.ac.uk> wrote:

On Mon Jul 9 19:50:22 2012, Nicee Srivastava wrote:

Hello everyone,

i am trying to develop a standalone application on netbeans, and need
to add an alignment viewer. So is it possible to add jalview jar and
use it to display the multiple sequence alignment?

this is entirely possible, but you may need to tweak Jalview’s GUI
classes to work with your application.

Please sign up at http://www.jalview.org/mailman/listinfo/jalview-dev
and we’ll move the discussion over there.

Jalview-discuss mailing list
Jalview-discuss@jalview.org
http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss

–
Regards,
Nicee Srivastava
Phd Student,
Group of Prof. Dr. Dirk Fasshauer,
Faculty of Biology and Medicine,
Department of Biology and Cellular Morphology,
Quartier UNIL-CHUV,
Rue du Bugnon 9,
CH-1005 Lausanne .

4

Hello Nicee.

···

On Tue Jul 10 18:15:06 2012, Nicee Srivastava wrote:

Thanks a lot for your reply. I managed to add the Jalview alignment
viewer in my application.

Very nice to hear that you did this so painlessly ! If your program will be publicly available, please send me a link and a figure and I'll add it to the list of links on the www.jalview.org/links.html page.

Jim.