Just looking at typing the remaining untyped hashtables, in particular propHash.
I noticed a few things that seem to be entirely unused or obsolete - can I remove these?
codonHash - read by _codonTranslate() only, which has been superseded by codonTranslate()
ssHash - secondary structure colours - not used anywhere
scaleColours - purple/red/orange/yellow/white colour gradient - not used anywhere
Mungo
The University of Dundee is a registered Scottish Charity, No: SC015096
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Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
School of Life Sciences
University of Dundee, Dundee, Scotland, UK.
www.jalview.org
www.compbio.dundee.ac.uk