We are improving Jalview’s unit test coverage, currently we have in place unit tests which covers Jalview’s automatic file identification protocol. The Identification system performs quite nicely with the standard data files currently available to us, however to ensure it is very robust, we wish to test with more ‘difficult’ data files.
Accordingly, If you have come across a weird data file in any of the following formats supported by Jalview: BLC, FASTA, PHYLIP, PDB, Stockholm, Clustal, PFAM, MSF, PIR, PileUp, and GFF, please kindly pass it across to us so we can include it as part of our test data.
Many thanks,
Charles
Ofoegbu Tochukwu Charles
Jalview Visual Analytics Developer/Scientist
The Barton Group
Division of Computational Biology
College of Life Sciences
University of Dundee, Dundee, Scotland, UK.
Skype: cofoegbu www.jalview.org www.compbio.dundee.ac.uk
The University of Dundee is a registered Scottish Charity, No: SC015096
We are improving Jalview’s unit test coverage, currently we have in place unit tests which covers Jalview’s automatic file identification protocol. The Identification system performs quite nicely with the standard data files currently available to us, however to ensure it is very robust, we wish to test with more ‘difficult’ data files.
Accordingly, If you have come across a weird data file in any of the following formats supported by Jalview: BLC, FASTA, PHYLIP, PDB, Stockholm, Clustal, PFAM, MSF, PIR, PileUp, and GFF, please kindly pass it across to us so we can include it as part of our test data.
Many thanks,
Charles
Ofoegbu Tochukwu Charles
Jalview Visual Analytics Developer/Scientist
The Barton Group
Division of Computational Biology
College of Life Sciences
University of Dundee, Dundee, Scotland, UK.
Skype: cofoegbu www.jalview.org www.compbio.dundee.ac.uk
The University of Dundee is a registered Scottish Charity, No: SC015096