Problem with JalView_Reza Zolfaghari Emameh

Dear Reza,

Sorry you had trouble with Jalview 2.8.2 exporting files.

It is possible that you are using an out of date JNLP file which is missing one of the libraries 2.8.2 depends on. Try launching Jalview with this
(insert your preferred memory setting!) You should then be able to export alignment figures!

Please register with the jalview-discuss mailing list for future questions about jalview. More people will see your message there.
Indeed, this problem with 2.8.2 for some people was already reported there.

Many thanks,



On 11/12/2014 16:37, Reza Zolfaghari Emameh wrote:

Dear Dr. Barton,


I have done ClustalO alignment by JalView (, but exporting the image as PNG file does not work at all. Only saving as HTML works. Would you please help me?!

Kind Regards,
Reza Zolfaghari Emameh

Reza Zolfaghari Emameh
PhD student of Biotechnology,
BioMediTech & School of Medicine,
University of Tampere,
Medisiinarinkatu 3,
B-Building, Room C-2198,
33014 Tampere,

Geoff Barton Professor of Bioinformatics
Head of Division of Computational Biology College of Life Sciences
University of Dundee, Scotland, UK.
Tel:+44 1382 385860

The University of Dundee is registered Scottish charity: No.SC015096