Hi ,
I wanted to make a dendrogram (like the one here: http://en.wikipedia.org/wiki/Phylogenetic_tree ). For an alignment and
tree calculated inside Jalview/clustalw
I am interested in something that creates a publication manipulatable
format like Adobe Illustrator or EPS.
Does anyone have any ideas . Also I am curious how to get the tree
output from Jalview into that recommended program.
In the window where the tree is drawn in Jalview, go to File > output to textbox. This will give you the tree in Newick format. >From just a google search of “phylogenetic tree drawers” I found this:
On Thu, May 13, 2010 at 12:02 PM, hari jayaram <harijay@gmail.com> wrote:
Hi ,
I wanted to make a dendrogram (like the one here: http://en.wikipedia.org/wiki/Phylogenetic_tree ). For an alignment and
tree calculated inside Jalview/clustalw
I am interested in something that creates a publication manipulatable
format like Adobe Illustrator or EPS.
Does anyone have any ideas . Also I am curious how to get the tree
output from Jalview into that recommended program.
Here is a summary of the responses to my question:
Reza suggested SplitsTree (www.splitstree.org). There's also
Optimage (http://www.manchester.ac.uk/bioinformatics/optimage/) that
allows you to do the tree in 3D.
Laurens email is reproduced below.
Thanks a tonne everyone.
Hari
In the window where the tree is drawn in Jalview, go to File > output
to textbox. This will give you the tree in Newick format. From just a
google search of "phylogenetic tree drawers" I found this:
On Thu, May 13, 2010 at 3:02 PM, hari jayaram <harijay@gmail.com> wrote:
Hi ,
I wanted to make a dendrogram (like the one here: Phylogenetic tree - Wikipedia ). For an alignment and
tree calculated inside Jalview/clustalw
I am interested in something that creates a publication manipulatable
format like Adobe Illustrator or EPS.
Does anyone have any ideas . Also I am curious how to get the tree
output from Jalview into that recommended program.