Phosphorylation site prediction

Jalview Discussion
1

Greetings everyone!

I am relatively new to Jalview so maybe this will seem like a noob question. I am trying to perform a phosphorylation site prediction of the bacterial proteins that I aligned in Jalview. In the demo project, I saw it was possible to do that but I haven’t been able to backtrack and do this for my alignment.

Can anyone provide some insight on this matter?

Thank you all in advance.

Regards,

Nebojsa Bogdanovic

2

Hi Nebosja - it looks like you might not have seen my reply to your earlier posting about this… maybe it went to spam ? Trying you direct just to make sure!

You can see my (rather lengthy) reply in the archives here:

http://www.jalview.org/pipermail/jalview-discuss/2018-October/001502.html

Hope it helps !
Jim.

Greetings everyone!

I am relatively new to Jalview so maybe this will seem like a noob question. I am trying to perform a phosphorylation site prediction of the bacterial proteins that I aligned in Jalview. In the demo project, I saw it was possible to do that but I haven’t been able to backtrack and do this for my alignment.

Can anyone provide some insight on this matter?

Thank you all in advance.

Regards,

Nebojsa Bogdanovic

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On 18/10/2018 16:48, #BOGDANOVIC NEBOJSA# wrote:

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Dr JB Procter, Jalview Coordinator, The Barton Group
Division of Computational Biology, School of Life Sciences
University of Dundee, Dundee DD1 5EH, UK.
+44 1382 388734 | [www.jalview.org](http://www.jalview.org) | [www.compbio.dundee.ac.uk](http://www.compbio.dundee.ac.uk)