Pairwise alignment not working reliably in 2.10.4b1

Follow-up. The problem occurs when sequences are different length, but since this is common in alignments I think this is a bug. Should short sequences have “-“ so that all sequences are of the same length?

Thanks,
Mark

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_______________________________________________
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry, U-M Medical School
Room 3220B, MSRB III saper@umich.edu +1 (734) 764-3353

Hi Mark. This certainly sounds like a bug. Can you send me an example showing the problem ? It’s not really clear from your first email.

Thanks in advance,
Jim.

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On Tue, Jun 19, 2018, 7:32 PM Mark Saper <saper@umich.edu> wrote:

Follow-up. The problem occurs when sequences are different length, but since this is common in alignments I think this is a bug. Should short sequences have “-“ so that all sequences are of the same length?

Thanks,
Mark


Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry, U-M Medical School
Room 3220B, MSRB III saper@umich.edu +1 (734) 764-3353


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