Dear Jalview Team
I frequently need to highlight important residues/peptides into alignment. Your team had previously built a custom script for me to highlight a selection of peptide sequences onto an alignment (scrip attached). This script would take a list of peptides (from an input file which specifies peptide sequence, comment, required hex colour), find them into alignment and “paint” them with a specified colour.
I was wondering if you could help me tweak the script to similarly paint a list specified residues (from an input file which specifies sequence name, residue number, comment, required colour).
I am attaching the script, example alignment and the example input file.
Thank you for keeping Jalview so well-supported.
aligned_cesa.fa (12.8 KB)
input.txt (577 Bytes)
(Attachment PeptidePainter1.groovy is missing)