My 2.10.2 issues and branches

Ready for test and merged in:

  • JAL-2443 a sub-task of 2436/2438
  • JAL-2442 transparency in applet
  • JAL-2430 structure colour of hidden columns
  • JAL-1476 message for failed superposition
  • JAL-2405 new group colour options
  • JAL-384 custom colour schemes
  • JAL-2401 Lower Case Colour button
  • JAL-2379 PCA footprint
  • JAL-2398 BLOSUM62 C->R score
  • JAL-2386 Change Colour Apply to All Groups behaviour
  • JAL-2385 update threshold slider on change of group
  • JAL-2384 change colour preserve threshold
  • JAL-2383 modify threshold on all colour menus
  • JAL-2243 update Feature Settings when features added
  • JAL-2373 group colour menu behaviour
  • JAL-2362 structure colour command
  • JAL-2361 (for retest) colour menu options
  • JAL-2295 exchange features/attributes Jalview/Chimera

Ready for test but not yet merged in:

  • JAL-2431 New View cDNA consensus
  • JAL-2435 change font in split frame
  • JAL-2399 cancel group text colour change
  • JAL-2400 Text Colour widget (on bug/2399)
  • JAL-2346 Colour by Annotation widget behaviour

Work in progress and might or might not make 2.10.2:

  • JAL-2393, 210, 374, 790, 791, 838, 2397, 2398, 2416, 2423, 2428
    • features/JAL-2393 branch
    • parameterisation of Tree / PCA calculation, custom substitution matrices

Work in progress and not expected to make 2.10.2:

  • features/JAL-2446

    • structured features storage including NCList

Mungo

The University of Dundee is a registered Scottish Charity, No: SC015096

···

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Mungo Carstairs
Jalview Computational Scientist

The Barton Group
Division of Computational Biology

School of Life Sciences

University of Dundee, Dundee, Scotland, UK

www.jalview.org

www.compbio.dundee.ac.uk
g.m.carstairs@dundee.ac.uk

University of Dundee FacebookUniversity of Dundee TwitterUniversity of Dundee LinkedInUniversity of Dundee YouTubeUniversity of Dundee InstagramUniversity of Dundee Snapchat
We’re Scottish University of the Year again!
The Times / Sunday Times Good University Guide 2016 and 2017

Thanks!

···

Email signature

University of Dundee shield logo

Mungo Carstairs
Jalview Computational Scientist

The Barton Group
Division of Computational Biology

School of Life Sciences

University of Dundee, Dundee, Scotland, UK

www.jalview.org

www.compbio.dundee.ac.uk
g.m.carstairs@dundee.ac.uk

University of Dundee FacebookUniversity of Dundee TwitterUniversity of Dundee LinkedInUniversity of Dundee YouTubeUniversity of Dundee InstagramUniversity of Dundee Snapchat
We’re Scottish University of the Year again!
The Times / Sunday Times Good University Guide 2016 and 2017

Ready for test and merged in:

  • JAL-384 custom colour schemes
  • JAL-1476 message for failed superposition
  • JAL-2243 update Feature Settings when features added
  • JAL-2295 exchange features/attributes Jalview/Chimera
  • JAL-2361 (for retest) colour menu options
  • JAL-2362 structure colour command
  • JAL-2373 group colour menu behaviour
  • JAL-2379 PCA footprint
  • JAL-2383 above PID threshold not restored from project etc
  • JAL-2384 change colour preserve threshold
  • JAL-2385 update threshold slider on change of group
···

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so ... um - what's changed from yesterday ? :wink:

Just not quite sure its useful to everyone to have accumulated status
updates emailed out. Much prefer if we could have a script or Jira query
to do this kind of report.

Jim.

···

On 22/03/2017 15:46, Mungo Carstairs (Staff) wrote:

Ready for test and merged in:

  * JAL-2443 /a sub-task of 2436/2438///
  * JAL-2442 transparency in applet
  * JAL-2430 structure colour of hidden columns
  * JAL-1476 message for failed superposition
  * JAL-2405 new group colour options
  * JAL-384 custom colour schemes
  * JAL-2401 Lower Case Colour button
  * JAL-2379 PCA footprint
  * JAL-2398 BLOSUM62 C->R score
  * JAL-2386 Change Colour Apply to All Groups behaviour
  * JAL-2385 update threshold slider on change of group
  * JAL-2384 change colour preserve threshold
  * JAL-2383 modify threshold on all colour menus
  * JAL-2243 update Feature Settings when features added
  * JAL-2373 group colour menu behaviour
  * JAL-2362 structure colour command
  * JAL-2361 (for retest) colour menu options
  * JAL-2295 exchange features/attributes Jalview/Chimera

Ready for test but not yet merged in:

  * JAL-2431 New View cDNA consensus
  * JAL-2435 change font in split frame
  * JAL-2399 cancel group text colour change
  * JAL-2400 Text Colour widget (on bug/2399)
  * JAL-2346 Colour by Annotation widget behaviour

Work in progress and might or might not make 2.10.2:

  * JAL-2393, 210, 374, 790, 791, 838, 2397, 2398, 2416, 2423, 2428
      o features/JAL-2393 branch
      o parameterisation of Tree / PCA calculation, custom substitution
        matrices

Work in progress and not expected to make 2.10.2:

  * features/JAL-2446
      o structured features storage including NCList

Mungo

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*Mungo Carstairs*
Jalview Computational Scientist

The Barton Group
Division of Computational Biology

School of Life Sciences

University of Dundee, Dundee, Scotland, UK

www.jalview.org <http://www.jalview.org>

www.compbio.dundee.ac.uk <http://www.compbio.dundee.ac.uk>
g.m.carstairs@dundee.ac.uk <mailto:g.m.carstairs@dundee.ac.uk>

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*We're Scottish University of the Year again!*
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The Times / Sunday Times Good University Guide 2016 and 2017

The University of Dundee is a registered Scottish Charity, No: SC015096

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