Dear list,
Our platform (https://www.genoscope.cns.fr/agc/microscope/home/index.php) uses JNLP to launch Jalview.
We have realized yesterday that it doesn't work anymore (we don't know since when it has been the case). The JNLP error is:
#### Java Web Start Error:
#### JAR resources in JNLP file are not signed by same certificate
If I'm correct, we can't do anything on our side: it's up to you to sign all the JAR files with the same certificate. Is it right ?
Thanks in advance,
Mathieu
···
--
Mathieu Dubois - IR - UMR 8030 équipe LABGeM
CEA - Genoscope. 2 rue Gaston Crémieux. 91057 Evry Cedex France.
Bureau B07
+33 1 60 87 53 35
Hi Mathieu,
Please could you try the steps described at
http://www.jalview.org/faq#jar
(if you haven’t already done so), and let us know if that resolves the problems.
Best regards,
Mungo
···
Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
School of Life Sciences
University of Dundee, Dundee, Scotland, UK
www.jalview.org
www.compbio.dundee.ac.uk
g.m.carstairs@dundee.ac.uk
We’re Scottish University of the Year again!
The Times / Sunday Times Good University Guide 2016 and 2017
From: jalview-discuss-bounces@jalview.org jalview-discuss-bounces@jalview.org on behalf of Mathieu Dubois mdubois@genoscope.cns.fr
Sent: 20 November 2018 08:15:30
To: jalview-discuss@jalview.org
Subject: [Jalview-discuss] Launching Jalview via JNLP
Dear list,
Our platform
(https://www.genoscope.cns.fr/agc/microscope/home/index.php) uses JNLP
to launch Jalview.
We have realized yesterday that it doesn’t work anymore (we don’t know
since when it has been the case). The JNLP error is:
Java Web Start Error:
JAR resources in JNLP file are not signed by same certificate
If I’m correct, we can’t do anything on our side: it’s up to you to sign
all the JAR files with the same certificate. Is it right ?
Thanks in advance,
Mathieu
–
Mathieu Dubois - IR - UMR 8030 équipe LABGeM
CEA - Genoscope. 2 rue Gaston Crémieux. 91057 Evry Cedex France.
Bureau B07
+33 1 60 87 53 35
Jalview-discuss mailing list
Jalview-discuss@jalview.org
http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
The University of Dundee is a registered Scottish Charity, No: SC015096
Hi Mathieu.
Just as a follow on from Mungo’s email - we recommend that web applications use our launchApp servlet at www.jalview.org/services/launchApp, which always offers the latest version of the JNLP file.
Our platform
([https://www.genoscope.cns.fr/agc/microscope/home/index.php](https://www.genoscope.cns.fr/agc/microscope/home/index.php)) uses JNLP
to launch Jalview.
I’ve also added MicroScope to our ‘Links’ section of our Jalview community pages (http://www.jalview.org/community/links - should appear there shortly).
···
On 20/11/2018 08:15, Mathieu Dubois wrote:
-------------------------------------------------------------------
Dr JB Procter, Jalview Coordinator, The Barton Group
Division of Computational Biology, School of Life Sciences
University of Dundee, Dundee DD1 5EH, UK.
+44 1382 388734 | [www.jalview.org](http://www.jalview.org) | [www.compbio.dundee.ac.uk](http://www.compbio.dundee.ac.uk)
Hi Jim and Mongo,
Thank you very much for your help. I was able to generate a correct JNLP file.
We generate the JNLP file ourselves because we pass a parameter to JalView (-open URL). I'm not sure if we can do that with the launchApp servlet.
And thanks for mentioning MicroScope on your site. Of course, we mention JalView in our doc but we should probably give it more credits. I will think about that, too.
Mathieu
···
--
Mathieu Dubois - IR - UMR 8030 équipe LABGeM
CEA - Genoscope. 2 rue Gaston Crémieux. 91057 Evry Cedex France.
Bureau B07
+33 1 60 87 53 35
Hi Mathieu
Hi Jim and Mongo,
Thank you very much for your help. I was able to generate a correct JNLP
file.
very welcome 
We generate the JNLP file ourselves because we pass a parameter to
JalView (-open URL). I'm not sure if we can do that with the launchApp
servlet.
That’s actually the reason we set up the service:
http://www.jalview.org/services/launchApp?open=http%3A%2F%2Fwww.jalview.org%2Fexamples%2Funiref50.fa&annotations=http%3A%2F%2Fwww.jalview.org%2Fexamples%2Funiref50.score_ascii&treeFile=http%3A%2F%2Fwww.jalview.org%2Fexamples%2Fferredoxin.nw
Documentation for supported parameters is given as a comment in the JNLP file:
<?xml version="1.0" encoding="UTF-8"?>