Jalview-discuss Digest, Vol 68, Issue 8

Hi Jim

The next test is whether the JABAWS services are functional. If you
click on the services status link you should be able to see if
everything is working.

If all the above work, and you still cant get Jalview to connect, then:
1. open the Jalview console window and hit clear.
2. Hit the 'refresh services' button on the webservices config panel -
send the contents of the console window to me directly.

Everything works on the website services status link

cleared console.

I have a webservices config panel (in the subwindow is the only one i can find) but i dont see a refresh services option or button or any obvious way to navigate to anywhere that may have such button.

my drop-down menu from web service has alignment, secondary structure, (protein disorder), Anlaysis , (Envision 2), Fetch DB references.

As for my other question, I am a benefiteer at the present, so theres no chance of making onto your course sadly, not with a PhD and the law as it stands, unless you know of any jobs.

Kind regards

James

···

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Subject: Jalview-discuss Digest, Vol 68, Issue 8

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Today's Topics:

  1. Re: Fw: web service config prob (Jim Procter)
  2. Re: annotations: conservation, quality and consensus (Jim Procter)

----------------------------------------------------------------------

Message: 1
Date: Fri, 22 Nov 2013 15:14:34 +0000
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Subject: Re: [Jalview-discuss] Fw: web service config prob
To: jalview-discuss@jalview.org
Message-ID: <528F74DA.8090801@compbio.dundee.ac.uk>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Hi James - sorry to hear you are having problems!

Can you browse the JABAWS web site on your computer's browser ?

http://www.compbio.dundee.ac.uk/jabaws/

The next test is whether the JABAWS services are functional. If you
click on the services status link you should be able to see if
everything is working.

If all the above work, and you still cant get Jalview to connect, then:
1. open the Jalview console window and hit clear.
2. Hit the 'refresh services' button on the webservices config panel -
send the contents of the console window to me directly.

Hear from you soon !
Jim

------------------------------

Message: 2
Date: Fri, 22 Nov 2013 17:52:23 +0000
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Subject: Re: [Jalview-discuss] annotations: conservation, quality and
consensus
To: jalview-discuss@jalview.org
Message-ID: <528F99D7.9020802@compbio.dundee.ac.uk>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Hi again..

James RF Sutton wrote:

Does anyone else experience the software crash when you try to click
on quality or consensus to adjust?

Could you follow our FAQ re reporting this as a bug ?
http://www.jalview.org/faq#bug

it would be great to have a way to simply show conservation alone-
but i am not finding a way to do it, could anyone point this out pls

you can configure this in Jalview's preferences (the 'Visual') tab.

Jim.
ps. these are exactly the kind of details that we will be covering in
our Jalview workshop - registration is still open for another week or so!

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End of Jalview-discuss Digest, Vol 68, Issue 8
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