Jalview dev on Windows

Just trying a spot of testing from home (Jalview development build, Windows 7 64-bit, Java 7).

The PDB fetcher gave

java.lang.NoClassDefFoundError:

com/sun/jersey/api/client/config/ClientConfig
at jalview.gui.PDBSearchPanel.txt_search_ActionPerformed(PDBSearchPanel.java:91)

and then some odd behaviour (characters in the search field populated in reverse order) - which may just be a knock-on effect.

Also noticed no DAS providers listed again.

The University of Dundee is a registered Scottish Charity, No: SC015096

···

Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
College of Life Sciences
University of Dundee, Dundee, Scotland, UK.
www.jalview.org
www.compbio.dundee.ac.uk

Hi Mungo

Just trying a spot of testing from home (Jalview development build, Windows 7 64-bit, Java 7).

The PDB fetcher gave

java.lang.NoClassDefFoundError:

com/sun/jersey/api/client/config/ClientConfig
at jalview.gui.PDBSearchPanel.txt_search_ActionPerformed(PDBSearchPanel.java:91)

Looks like a build dependency problem.

and then some odd behaviour (characters in the search field populated in reverse order) - which may just be a knock-on effect.

eww!

Also noticed no DAS providers listed again.

could be config (dasregistry is gone - HTTP errors) or missing JSON (also possible re above).

Jim.

···

On 30/06/2015 06:08, Mungo Carstairs (Staff) wrote:

Should have said - this was the Install Anywhere build.

The DAS thing probably just needed me to update my config file as per http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2015-May/001185.html

The University of Dundee is a registered Scottish Charity, No: SC015096

···

Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
College of Life Sciences
University of Dundee, Dundee, Scotland, UK.
www.jalview.org
www.compbio.dundee.ac.uk


From: jalview-dev-bounces@jalview.org jalview-dev-bounces@jalview.org on behalf of Jim Procter foreveremain@gmail.com
Sent: 30 June 2015 07:34
To: Jalview Development List
Subject: Re: [Jalview-dev] Jalview dev on Windows

Hi Mungo

On 30/06/2015 06:08, Mungo Carstairs (Staff) wrote:

Just trying a spot of testing from home (Jalview development build, Windows 7 64-bit, Java 7).

The PDB fetcher gave

java.lang.NoClassDefFoundError:

com/sun/jersey/api/client/config/ClientConfig
at jalview.gui.PDBSearchPanel.txt_search_ActionPerformed(PDBSearchPanel.java:91)

Looks like a build dependency problem.

and then some odd behaviour (characters in the search field populated in reverse order) - which may just be a knock-on effect.

eww!

Also noticed no DAS providers listed again.

could be config (dasregistry is gone - HTTP errors) or missing JSON (also possible re above).

Jim.

ah - yes - installAnywhere may well be missing some dependencies. We need to take a look. I’d also like to make sure we are still happy re building linux packages for Debian et al. - we’ve accrued a number of additional libraries that may not all be available on free linux platforms.

I’ll be in around 9.45… talk at standup then.

jim

···

On 30/06/2015 09:00, Mungo Carstairs (Staff) wrote:

On 30/06/2015 06:08, Mungo Carstairs (Staff) wrote:

There’s a common Java error! This means in my experience that the jar file need rebuilding after deleting the build class files completely. Sometimes eclipse does not recognize all changes and fails to rebuild a class.

Bob

Robert M. Hanson
Chair, Chemistry

···

Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
College of Life Sciences
University of Dundee, Dundee, Scotland, UK.
www.jalview.org
www.compbio.dundee.ac.uk