Hello to all Jalview users,
Jalview 2.2 is now available for download from http://www.jalview.org
Jalview 2.2 has had several optimizations made to the code to allow usable editing and hiding of sequences of large alignments (~5000 protein sequences). Also the undo/redo system has been reimplemented to be much more memory efficient than previous Jalview releases.
New features include:
* Multiple views on alignment
* Sequence feature editing
* "Reload" alignment
* "Save" to current filename
* Background dependent text colour
* Right align sequence ids
* User-defined lower case residue colours
* Format Menu
* Select Menu
* Menu item accelerator keys
* Control-V pastes to current alignment
* Cancel button for DAS Feature Fetching
* PCA and PDB Viewers zoom via mouse roller
* User-defined sub-tree colours and sub-tree selection
* 'New Window' button on the 'Output to Text box'
Features resolved:
* New memory efficient Undo/Redo System
* Optimised symbol lookups and conservation/consensus calculations
* Region Conservation/Consensus recalculated after edits
* Fixed Remove Empty Columns Bug (empty columns at end of alignment)
* Slowed DAS Feature Fetching for increased robustness.
* Made angle brackets in ASCII feature descriptions display correctly
* Re-instated Zoom function for PCA
* Sequence descriptions conserved in web service analysis results
* Uniprot ID discoverer uses any word separated by '∣'
* WsDbFetch query/result association resolved
* Tree leaf to sequence mapping improved
* Smooth fonts switch moved to FontChooser dialog box.