gray box problem on osx

Hi,

I have a sequence alignment that I have imported as msf format. At the bottom of the graph I get the consensus of the alignment, however the conservation and quality are not shown and appear as a gray box. How can I get these two to show correctly?

Bryn

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R. Bryn Fenwick
robert.fenwick@irbbarcelona.org
Post-doctoral fellow
Chemistry and Molecular Pharmacology Programme
Institute for Research in Biomedicine (IRB Barcelona)
Parc Científic de Barcelona
Baldiri Reixac 10, 08028 Barcelona, SPAIN
Tel. (+34) 9340 20460

Hi Bryn,

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On 20/04/2011 14:02, Robert Brynmor Fenwick wrote:

I have a sequence alignment that I have imported as msf format. At the bottom of the graph I get the consensus of the alignment, however the conservation and quality are not shown and appear as a gray box. How can I get these two to show correctly?

Are you working on an alignment of nucleic acid sequences ? Jalview doesn't show the conservation and quality rows for nucleotide alignments because these rows are based on protein sequence alignment calculations.

if not, send me a fragment of your alignment so I can see what's going on!

Jim.