Graphline is not added from annotation file

Jalview Discussion
1

Hello,

I am unable to add a graphline into annotation in Jalview 2.11.5.1

This is a minimal example created from annotation file example at : https://www.jalview.org/help/html/features/annotationsFormat.html

I load these sequences from file:

fasta_test
MDESC
fasta_test2
MAEGH

and then upload annotation file consisting of:

#Comment lines follow the hash symbol
JALVIEW_ANNOTATION
LINE_GRAPH Green Values 1.1|2.2|1.3|3.4|0.7
LINE_GRAPH Red Values 2.1|3.2|1.3|-1.4|5.5
NO_GRAPH Icons E|E|H|H|
COLOUR Red Values 255,0,0
COLOUR Green Values green
GRAPHLINE Red Values 2.6 threshold ff0000

the resulting annotation contains everything except horizontal red line defined by the GRAPHLINE statement (see figure).

jalview_test_file
jalview_test_file129×471 6.57 KB

Is this a bug or did the syntax for annotation files changed?

Thank you

Michal

2

Hi ! Thanks so much for reporting this, you are absolutely correct - 2.11.5.1 is definitely not showing graphlines :frowning: - we’ll try and get this patched asap ! Bug reported here: https://issues.jalview.org/browse/JAL-4662

Jim