Feature request - selection the node on the tree window that causes selection of the sequence on the alignment window

Hello Dear Jalview developers and contributes,

I wish to add a new option to Jalview here it is: selection the node on the tree window that causes selection of the sequence on the alignment window.
my MSA file consists of ancestral sequences for each node on the tree i will this sequence to be selected once the node is selected.

any help would be appreciated,
Gershon

···

Gershon Celniker


Tel Aviv University - TAU | Bioinformatics programmer

Prof Nir ben-Tal lab | Prof Tal Pupko lab

Ramat Aviv, Tel Aviv 69978 | Israel

Tel: 972-3-6406624 | Cell phone: 972-54-7909889

Skype: Gershonc

http://ibis.tau.ac.il/wiki/nir_bental/
http://www.tau.ac.il/~talp/

Dear Gershon,

···

On 13/03/2012 12:25, Gershon Celniker wrote:

I wish to add a new option to Jalview here it is: selection the node on the tree window that causes selection of the sequence on the alignment window.
my MSA file consists of ancestral sequences for each node on the tree i will this sequence to be selected once the node is selected.

Ah - this is something that used to be possible, since I put together an ancestral sequences demo for the VAMSAS system, where internal nodes could be linked to inferred sequences.

There are a couple of ways we could do this. Could you send me an example of an alignment with reconstructed sequences and a tree with internal node names so I can work out what might be the easiest one ?
Jim.