Export fails for big alignment

Hello,

I have 250 sequence alignment. I’m interested in exporting the consensus logo with percentage conservation (only visible when I hover over).

The problem is the image is too big, it doesn’t open. How can I fix that?

Regards.

Hello Ahmad,

Can you please confirm

  • the output image format (e.g. EPS) and file size
  • how you are trying to open it (e.g. OSX Preview, Adobe Illustrator, other)
  • any error message you can see when trying to open the file

We have seen problems in the past due to MAC’s Preview having size limits when showing EPS files (which it converts automatically to PDF). These are documented in this issue

https://issues.jalview.org/browse/JAL-2695

but it is possible your problem has a different cause.

Best regards,

Mungo

···

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Mungo Carstairs
Jalview Computational Scientist

The Barton Group
Division of Computational Biology

School of Life Sciences

University of Dundee, Dundee, Scotland, UK

www.jalview.org

www.compbio.dundee.ac.uk
g.m.carstairs@dundee.ac.uk

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From: jalview-discuss-bounces@jalview.org jalview-discuss-bounces@jalview.org on behalf of Ahmad Khalifa underoath006@gmail.com
Sent: 11 April 2019 17:17:40
To: jalview-discuss@jalview.org
Subject: [Jalview-discuss] Export fails for big alignment

Hello,

I have 250 sequence alignment. I’m interested in exporting the consensus logo with percentage conservation (only visible when I hover over).

The problem is the image is too big, it doesn’t open. How can I fix that?

Regards.

The University of Dundee is a registered Scottish Charity, No: SC015096