Ensembl variant features on peptide

It’s beginning to work:

Screenshot shows CDS and peptide sequences for a transcript.

Green highlighting is where there is a ‘sequence_variant’ feature.

The peptide variants show all possible translations of the variants in the corresponding codon.

In the example, residue 26 is normally E, but may be D, Q, H, Y or STOP, as the first and third codon positions have variants in Ensembl.


The University of Dundee is a registered Scottish Charity, No: SC015096


Mungo Carstairs
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
School of Life Sciences
University of Dundee, Dundee, Scotland, UK.