Create consensus sequence of only nucleotides above a certian probability threshold.

I was wondering if there was a way to make the consensus sequence only show nucleotides above a certain probability (ex. 85%) and to replace any nucleotides below this threshold with a “-” or other placeholder.

Hi ! Thanks for posting, this is a great question.

As I said on your feature request (thanks also) - - this is something that could easily be built in to jalview, but not currently available in

I’ve added an experimental patch to see how it would work - you can try it by: