great ! One thing to bear in mind though is that colour by annotation shades slightly differently - since the percentage identity calculation is appled to each type of residue in each column, rather than across the whole column (so the sequences with the residue identical to the consensus is dark blue, and the next most frequent residue is shaded a lighter blue… through to white).
If you’d like to vote for a real customisable Percent Identity or BLOSUM shading model to be implemented in the future, then sign up at our feature/bug database and vote on this page:
http://issues.jalview.org/browse/JAL-384
Jim.
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On 13/02/2015 13:34, Israel Hanukoglu wrote:
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Division of Computational Biology, College of Life Sciences
University of Dundee, Dundee DD1 5EH, UK.
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