Dear Jalview Users,
I would like to know if it is possible to change the BLOSUM62 color from blue to shades of grey?
Thanks.
Best regards.
-Chris
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Chris Ulens, Ph.D.
Lab of Structural Neurobiology
Department of Molecular Cell Biology
Campus Gasthuisberg, ON1
Herestraat 49, PB 601
B-3000 Leuven
Belgium
e chris.ulens@med.kuleuven.be
t +32 16 330689
f +32 16 345699
w http://www.xtal.be
Hi Chris.
I would like to know if it is possible to change the BLOSUM62 color
from blue to shades of grey?
It's not possible via Jalview's user interface, and unfortunately, the blosum62 colourscheme is currently implemented as a hard-wired set of colours. However, if you need grayscale for figure export, then I'd recommend post-processing your alignment figure in illustrator (or inkscape for EPS), or image magick (for PNG) - or even exporting as EPS and printing it to PDF using grayscale colour settings.
Alternately, I could give you some pointers if you would like to improve jalview by implementing this as a new feature!
Jim.
On 05/12/2011 17:31, Chris Ulens wrote: