Dear Jalview developers,
Thank you for programming this tool. I am not familiar with the
formalities of your bug reporting system, but I still want you to inform
about this issue.
There seems to be strange bug, if NO_GRAPH" secondary structure
annotations are parsed from an annotation file: If there is a lower case
representation of the used
secondary structure symbol ("H" or "E") present in the text label, the
visual result is an arrow that shows to left. Example...
H,phosphorylation site|
...results in a left directed arrow, while...
H,pxospxorylation site|
results in a bar.
If |E,phosphorylation site| and |E,phosphorylation sitx| are used, this
results in a left and right directed arrow, respectively. If three fields
are used, it is the third field (text label) that matters: |E,phosphorylation
site,phosphorylation sitx| results in right directed arrow, while
E,phosphorylation site,phosphorylation site| in a left directed one.
I use InstallAnywhere,Linux version that I downloaded a few days ago.
A little example is attached.
Best regards
Arne
my_alignment.fasta (186 Bytes)
my_annotation (167 Bytes)
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