Sorry for the delay in replying, I was on holiday last week.
email@example.com is the monitored email address / discussion list for Jalview bugs and feature requests generally.
If you change your applet parameter name from "annotations" to "features" then the file will load correctly.
Your file is a Jalview features file (http://www.jalview.org/help/html/features/featuresFormat.html) rather than an annotations file (http://www.jalview.org/help/html/features/annotationsFormat.html).
Jalview desktop has a single menu option to load either an annotations or a features file, the applet has a distinct parameter for each type of file.
Let me know if any of that is not clear!
Jalview Computational Scientist
The Barton Group
Division of Computational Biology
School of Life Sciences
University of Dundee, Dundee, Scotland, UK.
From: Romain Studer <firstname.lastname@example.org>
Sent: 15 October 2015 15:51
To: Mungo Carstairs (Staff)
Subject: Annotations file cannot load in the applet
I am now trying to upload my files on my webserver, using the last
version of the applet.
With the applet, I manage to load the alignment and the tree, but
impossible to load the annotations file.
I don't think there is a problem with the file itself, as it loads
perfectly in Jalview stand alone.
I attached an archives of my files (don't pay attention to the old
reference). I would appreciate if you could give me some help.
(if I should have sent this email to another email, more generic, please
don't hesitate to redirect me).
Wellcome Genome Campus
CB10 1SD, UK
Tel: +44 (0)1223 492 547
The University of Dundee is a registered Scottish Charity, No: SC015096