Annotation Loading

Jalview Discussion
1

Hi!

I am currently trying to add an annotation to my alignment. I will copy the header of the file that I have been trying to import as well as the error that the console is returning to me. I was just wondering if there is something wrong with the file. I am running 2.11.5 on windows if that helps. Thanks!

Header:
JALVIEW_ANNOTATION
SEQUENCE_REF: eGFP_WT/1-239
BAR_GRAPH Bar Graph 1 an html tooltip for Bar graph 1.
0.0 | 0.0 | 0.0 | 0.9677781 | 0.0 | 0.0 | 0.3152986 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 …

Console Output:

“DEBUG - Drop handled as javaFileListFlavor
DEBUG - Scanning dropped content for Windows Link Files
DEBUG - File format identified as JalviewAnnotation
java.util.NoSuchElementException
at java.util.StringTokenizer.nextToken(StringTokenizer.java:349)
at jalview.io.AnnotationFile.parseAnnotationFrom(AnnotationFile.java:1049)
at jalview.io.AnnotationFile.readAnnotationFile(AnnotationFile.java:756)
at jalview.io.AnnotationFile.annotateAlignmentView(AnnotationFile.java:730)
at jalview.gui.AlignFrame.loadJalviewDataFile(AlignFrame.java:5240)
at jalview.gui.AlignFrame$18.run(AlignFrame.java:5199)
at java.lang.Thread.run(Thread.java:750)“

2

Hey there :slight_smile:

It looks like there’s an errant ‘:’ in the second line - it should just be a plain tab after ‘SEQUENCE_REF’ like so:

JALVIEW_ANNOTATION
SEQUENCE_REF eGFP_WT/1-239
BAR_GRAPH Bar Graph 1 an html tooltip for Bar graph 1.
0.0 | 0.0 | 0.0 | 0.9677781 | 0.0 | 0.0 | 0.3152986 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0