which version of RNAview is pyRNA running ?

Hi Fabrice - we’re just fixing some issues with Pseudoknots, and are trying to compare outputs from different RNA secondary structure services.

I saw that the RNAML response from pyRNA includes:

"source":"tool:rnaview:N.A."

Can you let us know exactly which version is running behind the server ?

j

Heh… OK … I guess it’s just the one that we can all access ! Maybe there is something in the program output that tells us. Is it possible to get the raw output from the service ?

Jim.

···

Sent from my android device.

-----Original Message-----
From: Fabrice Jossinet fjossinet@gmail.com
To: Jim Procter jprocter@compbio.dundee.ac.uk
Cc: Jalview Development List jalview-dev@jalview.org
Sent: Wed, 08 Jul 2015 13:24
Subject: Re: which version of RNAview is pyRNA running ?

Dear Jim,

That’s an excellent question, i don’t know :wink: As you can see from here http://ndbserver.rutgers.edu/ndbmodule/services/download/rnaview.html or by using the tool from a command line, there is no information concerning a version. I did not check the source code.

F

Logo Fabrice Jossinet, PhD
“Evolution of non-coding RNAs in yeasts.”
Institut de Biologie Moléculaire et Cellulaire
UPR 9002 - CNRS
University of Strasbourg
f.jossinet@ibmc-cnrs.unistra.fr arn-ibmc.in2p3.fr

@fjossinet @ResearchGate
Tel: +33 (0)3 88 41 70 53
Fax: +33 (0)3 88 60 22 18

Le 8 juil. 2015 à 13:26, Jim Procter <jprocter@compbio.dundee.ac.uk> a écrit :

Hi Fabrice - we’re just fixing some issues with Pseudoknots, and are trying to compare outputs from different RNA secondary structure services.

I saw that the RNAML response from pyRNA includes:

"source":"tool:rnaview:N.A."

Can you let us know exactly which version is running behind the server ?

j