Dear Jalview Team,
I am trying to use Jalview with an user generated feature/annotation file. However, I get the following errors:
For the BAR_GRAPH command, only the histogram bars get displayed (not the labels below the histogram).
For the SEQUENCE_GROUP/PROPERTIES commands, it seems that nothing gets loaded into Jalview.
I am running Jalview on a Mac OS X 10.6 (I also tried on Windows XP with similar results). I was very careful in using tab delimited values and I have tried different possibilities assuming that Jalview may not parse correctly dashes or other symbols.
I really like Jalview and I would like to be able to import my annotations, but so far I was not able to go very far.
I pasted a shortened version of the sequence and feature/annotation files below. I can provide anyone with the original fasta and feature/annotation files. As an additional test, to make sure I am using thre proper format, I have tried to export the features and reload them - when the BAR_GRAPHs get reloaded the histogram labels do not get displayed correctly.
I would really appreciate if you can give me any type of feedback.
Thank you so much,
BAR_GRAPH Mutants1 Description1 -,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|-,1.2,[00ff00]|
BAR_GRAPH Mutants2 Description2 M,12.0,[4d0000]|-,[4d0000]|-,5.0,[4d0000]|1,1.0,[5d1500]|5,5.0,[9e6800]|3,3.0,[7d3f00]|8,8.0,[cea700]|3,3.0,[7d3f00]|8,8.0,[cea700]|6,6.0,[ae7d00]|
SEQUENCE_GROUP JGroup:0 4 4 -1 *
PROPERTIES JGroup:0 colour=% Identity outlineColour=a00000 displayBoxes=true displayText=true colourText=true
SEQUENCE_GROUP JGroupA 6 6 -1 1-3
PROPERTIES JGroupA colour=% Identity outlineColour=a0ff00 displayBoxes=true displayText=true colourText=true