Source of vamsas-client.jar

Hello dear Jalview developers,

  As you probably all know, I've invested quite some time recently in
packaging jalview for Debian [1]. For that, I must strip jalview of all
its bundled jars to rely on the debian ones (see the thread for more
info). I have almost succeeded to the point where I can compile jalview
with only jars packaged in Debian, but I'm hitting a last problem with
vamsas.

  Where is the source for the bundled vamsas-client.jar ? I have looked
at http://www.vamsas.ac.uk/, but unfortunately, the
vamsas-client-0.1.jar available for download there is missing a few
definitions that are needed for jalview 2.6.1 to compile.

  Attached is the output of a small script of mine, jardeps [2], that
show the difference in the interfaces (although, admittedly, in a not
very legible format).

  Could you point me to the location of the source for the jar used to
build jalview -- or post somewhere the diff to the 0.1 sources ?

  Many thanks,

  Vincent

[1] see for instance the thread starting at
http://www.compbio.dundee.ac.uk/pipermail/jalview-discuss/2011-April/000574.html
[2] if you really want it, it's there :
git://git.debian.org/git/users/fourmond/jardeps.git, but I'm currently
writing up something that will make it obsolete, so don't rely on it for
anything.

jalview-vs-public-vamsas.jardiff (4.84 KB)

···

--
If there was anything that depressed him more than his own cynicism, it
was that quite often, it still wasn't as cynical as real life.
-- Terry Pratchet, Guards, guards !

Vincent, listening to Italian Leather Sofa (CAKE)

Hi Vincent.

   Hello dear Jalview developers,

   As you probably all know, I've invested quite some time recently in
packaging jalview for Debian [1]. For that, I must strip jalview of all
its bundled jars to rely on the debian ones (see the thread for more
info). I have almost succeeded to the point where I can compile jalview
with only jars packaged in Debian, but I'm hitting a last problem with
vamsas.

This is one of the reasons I didn't finish packaging Jalview myself back at the debian medical sprint in January - because I have not officially released the 0.2 version of the Vamsas Client.

   Could you point me to the location of the source for the jar used to
build jalview -- or post somewhere the diff to the 0.1 sources ?

I can't do this immediately but I will do this in the near future. Sorry - I realise you want to finish the packaging, but unfortunately my resources are quite limited at the moment.

Jim

···

On 19/04/2011 21:06, Vincent Fourmond wrote:

Hello Jim !

   As you probably all know, I've invested quite some time recently in
packaging jalview for Debian [1]. For that, I must strip jalview of all
its bundled jars to rely on the debian ones (see the thread for more
info). I have almost succeeded to the point where I can compile jalview
with only jars packaged in Debian, but I'm hitting a last problem with
vamsas.

This is one of the reasons I didn't finish packaging Jalview myself back
at the debian medical sprint in January - because I have not officially
released the 0.2 version of the Vamsas Client.

  I thought so...

   Could you point me to the location of the source for the jar used to
build jalview -- or post somewhere the diff to the 0.1 sources ?

I can't do this immediately but I will do this in the near future. Sorry
- I realise you want to finish the packaging, but unfortunately my
resources are quite limited at the moment.

  That is perfectly fine. As you can see, I can't say that my resources
are unlimited too for the time being. When you release the newer vamsas,
I'll find the time to finish up jalview packaging.

  Thanks,

  Vincent

···

On 23/04/11 15:35, Jim Procter wrote:

On 19/04/2011 21:06, Vincent Fourmond wrote:

--
Vincent Fourmond, Doctor in Physics
http://vince-debian.blogspot.com/