Is there any guess on how soon a version that includes nucleotide manipulation will be released? I just want the simple stuff – reverse, compliment, translate
Have any nucleotide modules been written by anyone else for Jalview?
Thanks
Hi Lisa, thanks for the email.
Lisa M FitzGerald wrote:
Is there any guess on how soon a version that includes nucleotide manipulation will be released? I just want the simple stuff – reverse, compliment, translate
Jalview has a cDNA translate function which 'magically appears' under the 'Calculations' menu when you're working with a dna sequence.
Reverse and complement will be added to the todo list - they are both fairly easy to implement, but I suspect the first attempt will be very simple indeeed - ie :
1. select a region (or apply to whole alignment)
2. apply reverse or complement to create a new alignment containing the result.
Is that the kind of basic functionality you mean ?
Have any nucleotide modules been written by anyone else for Jalview?
not as far as I know - it would be great to hear about it if they have.
Jim.