Data fetcher

HI Michael,

I’m not sure why you are getting

http://www.dasregistry.org/das1/sources//sources

it should be

http://www.dasregistry.org/das/

You can change this under View->Feature Settings, then hit the DAS Settings tab and change the DAS registry URL.

I hope this helps.

Geoff.

Hi Geoff,

Many thanks for your reply!

Database fetchers do not initialize it seems.

CHEERS!

Michael

Jalview Desktop 2.8
Build Date: 12 November 2012
Java version: 1.6.0_65
x86_64 Mac OS X 10.6.8
WARN - Exception when discovering One Way services:
WARN - Exception when discovering One Way services:
INFO - Initialising googletracker for usage stats.
INFO - Constructing news reader.
INFO - Completed construction of reader.
WARN - GET request for “http://www.dasregistry.org/das1/sources//sources” resulted in 404 (Not Found); invoking error handler
INFO - Saved last read date as Dec 4, 2013 12:00:00 PM
INFO - Saved last read date as Dec 4, 2013 12:00:00 PM
INFO - Saved last read date as Dec 4, 2013 12:00:00 PM
Exception in thread “AWT-EventQueue-0” java.lang.StringIndexOutOfBoundsException: String index out of range: -1
at java.lang.String.substring(String.java:1937)
at jalview.ws.dbsources.das.datamodel.DasSourceRegistry.addLocalDasSources(DasSourceRegistry.java:196)
at jalview.ws.dbsources.das.datamodel.DasSourceRegistry.appendLocalSources(DasSourceRegistry.java:206)
at jalview.ws.dbsources.das.datamodel.DasSourceRegistry.getSources(DasSourceRegistry.java:168)
at jalview.gui.DasSourceBrowser.(DasSourceBrowser.java:103)
at jalview.gui.DasSourceBrowser.(DasSourceBrowser.java:115)
at jalview.gui.Preferences.(Preferences.java:110)
at jalview.gui.Desktop.preferences_actionPerformed(Desktop.java:1356)
at jalview.jbgui.GDesktop$7.actionPerformed(GDesktop.java:198)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
at javax.swing.AbstractButton.doClick(AbstractButton.java:389)
at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95)
at java.awt.MenuItem.processActionEvent(MenuItem.java:650)
at java.awt.MenuItem.processEvent(MenuItem.java:609)
at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:343)
at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:331)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:720)
at java.awt.EventQueue.access$400(EventQueue.java:82)
at java.awt.EventQueue$2.run(EventQueue.java:676)
at java.awt.EventQueue$2.run(EventQueue.java:674)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:690)
at java.awt.EventQueue$3.run(EventQueue.java:688)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:687)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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···

On 20/12/2013 19:05, Michael Wilson wrote:

-- 
Geoff Barton                             Professor of Bioinformatics
Head of Division of Computational Biology   College of Life Sciences
University of Dundee, Scotland, UK.          [g.j.barton@dundee.ac.uk](mailto:g.j.barton@dundee.ac.uk)
Tel:+44 1382 385860                         [www.compbio.dundee.ac.uk](http://www.compbio.dundee.ac.uk) 

The University of Dundee is registered Scottish charity: No.SC015096